torsdag 2 januari 2025

Krystalliinigeenit ja proteiinit Silmän ihmeitä on läpinäkyvät, optista valoa taittavat kudokset.

 Aloitan katsoa näitä 2.1. 2025  GeneCards listasta.  (Etsin myös  löytöjä, miten voi  elämäntapaohjein ja ravinnon avulla  pitää huolta  silmänsä optisten kudosten pysymisestä  funktionaalisina.  Tässä on vasta  perustavaa pohjatietojen  etsintää 2.1. 2025)

https://www.genecards.org/Search/Keyword?queryString=Crystallins

(Mitä kystalliinit ovat? Ensimmäisestä krystalliinista sitaatti:Nisäkkäitten  silmän linssin krystalliinit on jaettu kolmeen perheeseen: alfakrystalliinit, beetakrystalliinit ja gammakrystalliinit. 

Alfakrystalliineja on kaksi geenituotetta , alfa-A ja alfa-B, asidinen ja baasinen. Ne muodostavat heterogeenisia aggrekaatteja (3:1), jotka toimivat ikäänkuin  kaitsijaproteiinit,  mutta niiden  tehtävänä  on pitää  eri proteiineja liukoisena. Alfa-A esiintyy silmän linssissä ja alfa-B voi esiintyä laajasti muissakin kudoksissa ja elimissä.  Silmän linssissä ei ole metabolista  turn over- tapahtumaa, joten  krystalliiniproteiineissa heijastuu ikämuutokset ja ikävaiheet. Krystalliinit ovat  olennaisia silmän linssin läpinäkyvyydelle.

NCBI Gene Summary for CRYAB Gene    (GeneCards)

  • Mammalian lens crystallins are divided into alpha, beta, and gamma families. Alpha crystallins are composed of two gene products: alpha-A and alpha-B, for acidic and basic, respectively. Alpha crystallins can be induced by heat shock and are members of the small heat shock protein (HSP20) family. They act as molecular chaperones although they do not renature proteins and release them in the fashion of a true chaperone; instead they hold them in large soluble aggregates. These heterogeneous aggregates consist of 30-40 subunits; the alpha-A and alpha-B subunits have a 3:1 ratio, respectively. Two additional functions of alpha crystallins are an autokinase activity and participation in the intracellular architecture. The encoded protein has been identified as a moonlighting protein based on its ability to perform mechanistically distinct functions. Alpha-A and alpha-B gene products are differentially expressed; alpha-A is preferentially restricted to the lens and alpha-B is expressed widely in many tissues and organs. Elevated expression of alpha-B crystallin occurs in many neurological diseases; a missense mutation cosegregated in a family with a desmin-related myopathy. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2019]

     

    Muuta tietoa krystalliineista:

    https://pmc.ncbi.nlm.nih.gov/articles/PMC3554465/ 

     

    Figure 3.

    Figure 3

    Phylogenetic tree of the humanβγ-crystallin gene superfamily. Sequences were extracted from the UCSC web browser. Translated ORFs were aligned and neighbor-joining trees were constructed as in Figure 2. AIM1, AIML, and CRYBG3 contain internal repeats corresponding to three β-crystallin-like genes in addition to regions not related to crystallin genes. For simplicity, the third, most highly conserved crystallin repeat from each gene was used for this alignment (designated AIM1cter, etc.).

    CRYB genes

    This multigene family has ancient origins in vertebrates, and indeed the six human genes have clear orthologs in fish []. β-crystallins are subdivided into acidic (A) and basic (B) subunits, encoded in CRYBA(12,4) and CRYBB(123) genes. Unlike the α-crystallins, four of the β-crystallin genes, arranged as two pairs, are close together on Chr 22 (Table 1, Figure 4).

    Table 1.

    Human lens crystallin genes

    Crystallin genes Chr
    α-crystallins
     
    CRYAA/αA
    21q22.3
    CRYAB/αB
    11q23.1
    β-crystallins
     
    CRYBA1/βA1, βA3
    17q11.2
    CRYBA2/βA2
    2q35
    CRYBA4/βA4
    22q12.1
    CRYBB1/βB1
    22q12.1
    CRYBB2/βB2
    22q11.3
    CRYBB2 P1
    22q11.3
    CRYBB3/βB3
    22q11.23
    γ-crystallins
     
    CRYGAA
    2q34
    CRYGBB
    2q34
    CRYGC/γC
    2q33.3
    CRYGD/γD
    2q33.3
    CRYGEPE
    2q33.3
    CRYGFPF
    2q34
    CRYGS/γS
    3q27.3
    CRYGNN
    7q36.1
    CRYGGP
    2p16.3
    ‘Enyzme-crystallin’
     
    BHMT/ψ 5q14.1

    Gene/protein names and chromosome locations are shown. Genes/proteins in bold type are expressed at relatively high levels similar to orthologs in other mammals. Those in normal type seem to have reduced or no expression in human lens. Some are designated pseudogenes. The proposed crystallin designation for betaine-homocysteine methyltransferase (BHMT), ψ, does not imply pseudogene status.

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