fredag 18 maj 2018

lördag 24 mars 2018

Rosmariiniöljy - mitä tämä sisältää?

Rosmariinin öljyn osatekijöitä:
  • 18CINEOL eli eukalyptol

(saksalainen selitys) Pharmakologische Wirkungen
1,8-Cineol wirkt beim Menschen in der Lunge und den Nebenhöhlen schleimlösend und bakterizid. Außerdem hemmt es bestimmte Neurotransmitter, die für die Verengung der Bronchien verantwortlich sind. Bei Asthmatikern kann unter ärztlicher Kontrolle durch Gabe von reinem Cineol die Lungenfunktion verbessert werden.[9][10] Cineol stellt jedoch nur in Ausnahmefällen eine Alternative zu Corticosteroiden dar, die als Inhalation örtlich und nebenwirkungsarm angewandt werden können. Auch bei der chronisch-obstruktiven Lungenerkrankung COPD kann reines Cineol als Zusatzmedikation zur Standardtherapie unter Umständen die Lungenfunktion verbessern und auf diese Weise Exazerbationen reduzieren.[11]
Von 1,8-Cineol sind als Nebenwirkungen leichte Stuhlverflüssigung und eventuell leichte Übelkeit bekannt. Beides tritt nur bei oraler Einnahme auf. Weiterhin wurden – vor allem bei Kindern – auch allergische Reaktionen[12] beschrieben. Die Einnahme erfolgt durch orale Zufuhr von Kapseln, die sich erst im Dünndarm auflösen, durch Inhalation oder durch Zubereitung entsprechender den Wirkstoff enthaltender Pflanzen als Aufguss.





OCINUM lajeja:

torsdag 22 mars 2018

Diterpenoidien tutkimusalalta

Diterpenoidit kasvikunnassa voivat sisältää lääkkeellisiä ominaisuuksia , kun ne vain on saatu löydettyä.

Diterpenoids from the Medicinal Plants of Africa

Louis Pergaud Sandjoa, Victor Kueteb, in Medicinal Plant Research in Africa, 2013


Diterpenoids are secondary metabolites containing 20 atoms of carbon derived from the condensation of four isoprenyl units.
 As other terpenoids, they are widespread in the plant kingdom, and most of them biosynthetically derive from geranylgeranyl diphosphate, which forms
  •  acyclic (phytanes), 
  • bicyclic (labdanes, halimanes, clerodanes),
  •  tricyclic (pimaranes, abietanes, cassanes, rosanes, vouacapanes, podocarpanes),
  •  tetracyclic (trachylobanes, kauranes, aphidicolanes, stemodanes, stemaranes, atisanes, gibberellanes), and
  •  macrocyclic diterpenes (taxanes, cembranes, daphnanes, tiglianes, ingenanes) according to the cyclization that occurs [1].

 Diterpenoids are divided into more than 45 classes; they are also found in marine organisms, which provide interesting skeletons (Figure 3.1) such as elisapterane (39).
 Figure 3.1 presents the structural diversity and some of the skeletons of this class of compounds.

Plants produce secondary metabolites in response to some external factors from their biotope. To fight against these, the host plant produces diterpenes, which could represent a problem in the living ecosystem of that species because of the allelopathic activity of some of these terpenoids against surrounding flora [24]

In addition, diterpenoid quinones from the roots of Salvia officinalis were earlier reported to display DNA-damaging effect on colonic and hepatic human cells cultured in vitro, although cytotoxic activity was observed [25]. Nevertheless, these structures are synthesized in the ertheless, these structures are synthesized in the plant cells following a well-established mechanism.Read full chapter

tisdag 6 februari 2018


6.2.2018,10;21.Sana psalmista 86:15,16.
(A Maskil of Ethan the Ezrahite) Blessed are the people who know the festal shout, who walk , o Lord, in the light of thy countenance;who exult in thy name all the day, and extol thy righteousness.

måndag 1 januari 2018

Luonnollisista matrixmetalloproteinaasi-inhibiittoreista
 Mar Drugs. 2009 June; 7(2): 71–84.
Published online 2009 March 31. doi:  10.3390/md7020071
PMCID: PMC2707034

Matrix Metalloproteinase Inhibitors (MMPIs) from Marine Natural Products: the Current Situation and Future Prospects

Matrix metalloproteinases (MMPs) are a family of more than twenty five secreted and membrane-bound zinc-endopeptidases which can degrade extracellular matrix (ECM) components. They also play important roles in a variety of biological and pathological processes. 
Matrix metalloproteinase inhibitors (MMPIs) have been identified as potential therapeutic candidates for metastasis, arthritis, chronic inflammation and wrinkle formation. Up to present, more than 20,000 new compounds have been isolated from marine organisms, where considerable numbers of these naturally occurring derivatives are developed as potential candidates for pharmaceutical application. Even though the quantity of marine derived MMPIs is less when compare with the MMPIs derived from terrestrial materials, huge potential for bioactivity of these marine derived MMPIs has lead to large number of researches.

Saccharoids, flavonoids and polyphones, fatty acids are the most important groups of MMPIs derived from marine natural products. In this review we focus on the progress of MMPIs from marine natural products.
 Matrix metalloproteinases (MMPs), 
Matrix metalloproteinase inhibitors (MMPIs), 
 Tissue inhibitors of metalloproteinase (TIMPs), 
Marine natural products, 

1. Introduction

Matrix metalloproteinases (MMPs) are a family of zinc-dependent endopeptidases that degrade extracellular matrix (ECM) components and play important roles in a variety of biological and pathological processes [1]. MMPs regulate the synthesis and secretion of cytokines, growth factors, hormone receptors, and cell adhesion molecules. They also contribute to the growth and development, morphogenesis, tissue remodeling, angiogenesis, arthritis, cardiovascular disease, stroke, multiple sclerosis, neurodegenerative diseases, allergies, as well as cancer and a series of physiological and pathological processes [2, 3]. In tumor progression MMPs are important not only in invasion, angiogenesis, and metastasis, but also MMPs have roles in cancer cells transformation, growth, apoptosis, signal transduction and immune regulation [4, 5].
 Therefore, the development of matrix metalloproteinase inhibitors (MMPIs) to treat some important diseases, including cancers, neurodegenerative diseases, cardiovascular diseases and various kinds of inflammatory diseases have broad prospects [39].
Generally MMPs consist of a propeptide domain having about 80 amino acids, a catalytic metalloproteinase domain of about 170 amino acids, a linker peptide of variable lengths (also called the “hinge region”) and a hemopexin domain of about 200 amino acids [10]. However, not all of these domains are essential for MMPs; some MMPs lack the linker peptide and the hemopexin domain. MMPs contain a Zn2+ catalytic core; this zinc-binding site has a conservative HEXXHXXGXXH amino acid sequence. The catalytic domains of MMPs show homology, as their three-dimensional (3D) structure of the enzyme active site are highly conservative. The catalytic domain includes a pocket called the“S1′ pocket” located to the right of the zinc atom. This pocket is hydrophobic in nature, but variable in depth depending on the MMP. It is therefore one of the determining factors of substrate specificity of MMPs. Accordingly, the S1′ pocket in the catalytic domains of MMPs is most notable, and its depth, as well as the length and amino acid sequence of the peptide which around the S1′ pocket is important basis for design and synthesis of the MMPIs [1113].
MMPs’ activities can be regulated by endogenous inhibitors, such as tissue inhibitors of metalloproteinase (TIMPs), α2-macroglobin, heparin and the reversion-inducing cysteine-rich protein with kazal motifs (RECK) [4, 5].

 There are four TIMPs in humans (TIMP-1, -2, -3 and -4) with 22–29 kDa. TIMP-1 and TIMP-3 are glycoproteins, but TIMP-2 and TIMP-4 do not contain carbohydrates. They inhibit all MMPs tested so far [14]. These four TIMPs have different expression and distribution in the tissue and may be responsible for regulating the activity of a large number of protease families in vivo, including the metalloproteinases of a disintegrin and metalloproteinases (ADAMs) family. However, the TIMPs and other endogenous inhibitors have diversity of biological functions and also the protein delivery techniques are not developed, the use of these endogenous inhibitors in clinical applications have been delayed [4, 5].
Design and synthesis of MMPIs has gone through several stages of development over the past 20 years [13].

 Originally MMPIs was designed by simulating MMPs substrate, this is the first-generation of MMPIs. Most of them are peptides and their derivatives. Inhibition is occurred by chelating the Zn2+ of the MMP by the group present in inhibitors, such as hydroxylamine, carboxyl, SH, etc.. Mainly the Zn2+ is chelated with the oxyammonia-base by combining the substrate analogs peptide, at the same time through the substrate analogs peptide combine with the catalytic domains of MMP, and thus plays the inhibitory effect.

Strong Zn2+ chelating agents such as hydroxamate as a class of MMPIs have been developed, representative of these inhibitors are the British Biotech’s Batimastat (BB-94) and Marimastat (BB-2516), and they all have ideal inhibitory activity with the MMPs. Even through, these compounds can interact with Zn2+; they can’t distinguish between different MMPs

Therefore, the uses of first-generation of MMPIs as drugs in clinical applications were restricted.

Their shortcomings include: poor selectivity of MMPs, hydroxylamine substances have low oral bioavailability, the metabolism is not stable, poor solubility and the drug toxicity increase after amelioration. Therefore it was strongly suggested that the first generation of MMPIs must use another group in place of hydroxylamine group as a Zn2+ chelating group, or design new non-peptide MMPIs.

 For these proposed MMPIs, first, lead (Pb)  compounds were selected through high-throughput screening, then these lead compounds are reformed with the Safety Analysis Report (SAR) guidance, finally these new reagents with better effect was formed.

 The second-generation MMPIs also contain Zn2+ chelating group. These drugs have eliminated some of shortcomings of peptide drugs with considerable selectivity towards MMPs. However, in clinical applications they also have been impeded due to effectiveness and side effects [15, 16].
Clinical trials for the anti-cancer and anti-arthritis effects have been carried out using many early MMPIs. However, only a few MMPIs were effective (such as Marimastat, the overall survival rate of the gastric cancer and pancreatic cancer patients increase). Therefore they have not been used in the later stages of clinical trials.

At present, only one MMPI (Periostat) is being used clinically for periodontitis therapy [5, 15].
With intensive studies on MMPs, the MMPs host-cell defense functions and physiological functions have been discovered by researchers. The early MMPIs whether peptide inhibitors or small molecule inhibitors, their activities are most dependent on the Zn2+ chelating group and MMPs S1′ pocket combined group. However the Zn2+ chelating group also reduces these early MMPIs’ selectivity. In addition, these early MMPIs inhibit some MMPs physiological functions and some other metalloprotease such as DPP III and leucine aminopeptidase, when they inhibit the abnormal MMPs in pathology situation [5, 17].
To sum up the above arguments, the clinical trials of MMPIs in broad-spectrum, face the obstacle, as well as the normal physiological functions of MMPs should be further studied for the choice of drugs which are selectively acting on them for the MMPs relevant diseases. MMPs S1′ pocket determine the specificity of substrates and inhibitors in a large extent, therefore the S1′ pocket is very important for the design and synthesis of MMPIs. Design of MMPIs should be based on the unique functions of MMPs S1′ pocket, not only to increase the selectivity for this MMP, but also greatly reduce the inhibition of other class of metalloprotease such as ADAMs.

 At present, development of the new generation of MMPIs is guided by this idea. In addition, development of new type of MMPIs with different inhibiting mechanisms can increase the drugs’ selectivity; which may play a key role in the treatment of various diseases related to MMPs [1821].
Broadly speaking, the mechanisms of inhibiting the activity of MMPs include, direct inhibition of the enzymes, blocking the MMPs proenzyme activation, suppressing the synthesis of MMPs in the gene level, and so on.
The MMPIs can be divided into four classes:
  1.  the natural MMPIs secreted by tissues;
  2.  synthetic MMPIs;
  3.  MMPIs screened from natural products
  4.  and the MMPIs screened from the phage display random peptide library and antibody library. 
The synthetic MMPIs and natural product derived MMPIs are the hot spots. In recent years, due to the synthetic small molecule inhibitors meet a variety of issues in clinical applications, more attention is given to the research of MMPIs derived from natural products.
Lots of successful research work have been conducted to identify MMPIs from land natural products, also got a lot of results. For instance, Kim et al. were screened for nearly 90 kinds of extracts from clinical application herbal medicines, and found that the extracts from Baicalin, Cinnamon, Euonymus, and Magnolia have strong inhibitory effects on MMPs [2224]. However we should not forget that the ocean is treasure house which is full of natural products with amazing biological and pharmacological activities. About 80% of the planet’s animal and plant growth in the ocean, and the variety of marine bacteria can reach 500–100 million. Therefore discovering the ideal MMPIs from marine natural products is a very hot topic at present.

The leitmotiv along this review is to sum up the progress of research work carried out on identifying MMPIs from marine natural products. We divided the marine derived MMPIs into three classes, marine saccharoid MMPIs, marine flavonoids and polyphenols MMPIs and marine fatty acid MMPIs, and their properties will be discussed in this review.

2. MMPIs from marine natural products

2.1. Marine saccharoid MMPIs

The marine saccharoid MMPIs are very popular among marine derived MMPIs area. The most of marine saccharoid MMPIs inhibit MMP by direct down-regulation of MMP-9 transcription or via inhibition of activator protein-1(AP-1) pathway or nuclear factor κB (NF-κB) pathway. Kim et al. report the inhibitory effect of chitooligosaccharides (COS) on activation and expression of matrix metalloproteinase-2 (MMP-2) in primary human dermal fibroblasts (HDFs) for the first time. COS with 3–5 kDa exhibited the highest inhibitory effect on MMP-2 activity in HDFs, and protein expression of MMP-2 was also inhibited by COS with same molecular weight. This inhibition was caused by the decrease in gene expression and transcriptional activity of MMP-2[25]. Quang et al. have investigated the effect of Chitooligosaccharides (COS) on activity and expression of MMP-9 in HT1080 cells by gelatin zymography, RT-PCR, gene reporter assay, and western blot analysis. They found that MMP-9 inhibition in the presence of COS was clearly observed in gelatin zymography. Specifically, 1- to 3-kDa COS (COS-I) exhibited the highest inhibitory effect on MMP-9 activity in HT1080 cells among tested molecular mass fractions. It was also found that COS-I was capable of inhibiting both gene and protein expression of MMP-9 (P26
]. The novel low molecular-weight carboxylated Chitooligosaccharides (CCOS) has been evaluated for MMP-9 inhibitory effect on human fibrosarcoma cell line [27]. A clear dose-dependent inhibition on MMP-9 mediated gelatinolytic activities were observed in HT1080 cells following the treatment with CCOS in zymography experiments. Transfection studies carried out with MMP-9 and AP-1 reporter constructs suggested that the observed reduction in MMP-9 expression was due to down-regulation of MMP-9 transcription which mediated via inhibition of AP-1. However, in the presence of CCOS, NF-κB and TIMP-1 expression levels remained constant [27].
Adriana et al. investigated on the shrimp heparin-like glycosaminoglycan isolated from L. vannamei which was able to interfere on MMP-9 activity in activated human leukocytes. And it has the capacity to reduce 90% MMP-9 activity, either in a lower or higher concentrations (10 and 100 μg/mL), with pronounced effects [28]. In present studies, sulfated glucosamine (SG) has been reported to relieve joint pain and inflammation in many arthritis patients. Niranjan et al. studied for SG inhibitory effects on MMP-2 and MMP-9 in human fibrosarcoma cells. Expression and activity of above MMPs studied suggested SG as a potent MMP inhibitor, and inhibition of MMP-2 and MMP-9 was due to down-regulation of transcription factor, NF-κB. However, expression of activator protein-1 (AP-1) was not affected by SG treatment. Moreover, down-regulation of NF-κB resulted in production of low levels of both NF-κB p50 and p65 proteins and directly affected activation process of MMP-2 and MMP-9 expressions [29].
Angiogenesis is involved in initiating and promoting several diseases such as cancer and cardiovascular events. Chen et al. obtained highly sulfated λ-carrageenan oligosaccharides (λ-CO) by carrageenan depolymerization. They have demonstrated that λ-carrageenan oligosaccharides could effectively inhibit angiogenesis in the CAM (chick chorioallantoic membrane) model and human umbilical vein endothelial cells (HUVECs). Significant inhibition of vessel growth was observed at 200 μg/pellet. A histochemistry assay also revealed a decrease of capillary plexus and connective tissue in λ-CO treated samples. λ-CO inhibited the viability of cells at the high concentration of 1 mg/mL, whereas it affected the cell survival slightly (>95%) at a low concentration (30
Wang et al. isolated the sulfated S. maindroni ink polysaccharide (SIP-SII) from cuttlefish Sepiella maindroni, and examined the effects of SIP-SII on the expression of matrix metalloproteinases MMP-2 and MMP-9 as well as tumor cell invasion and migration. SIP-SII (0.8–500 mg/ml) significantly decreased the expression of MMP-2 activity in human ovarian carcinoma cells SKOV3. No significant decrease of MMP-9 was detected in the cell line after SIP-SII treatment [31].
Fucoidan is a uniquely-structured sulfated polysaccharide found in the cell walls of several types of brown seaweed which has been recently evaluated for its bioactivities by Ye et al. [32]. Enzyme-digested fucoidan extracts prepared from seaweed, Mozuku of Cladosiphon novae-caledoniae kylin showed in vitro invasion and angiogenesis abilities of human tumor cells. The mechanism of significant inhibition of HT1080 cells invasion by fucoidan extracts, possibly via suppressing MMP-2 and MMP-9 activities. Further, they investigated the effects of the fucoidan extracts on angiogenesis of human uterine carcinoma HeLa cells, and found that fucoidan extracts suppressed expression and secretion of vascular endothelial growth factor (VEGF) [32].
Marine saccharoid MMPIs exhibit high MMPs inhibitory activity either by direct inhibition of the enzyme or by inhibiting the expression of MMPs. And also these marine saccharoid MMPIs have shown low toxicity levels. However, due to high molecular weight of theses MMPIs the structure-activity relationship and also the mechanism of the activities are hard to be addressed by the researchers. If these shortcomings are overcome in the future, marine saccharoid MMPIs have a great potential to be used in clinical applications.

2.2. Marine flavonoids and polyphenols MMPIs

Flavonoid glycosides, isorhamnetin 3-O-b-D-glucosides, and quercetin 3-O-b-D-glucoside were isolated from Salicornia herbacea and their inhibitory effects on matrix metalloproteinase-9 and -2 were evaluated in human fibrosarcoma cell line [31]. These flavonoid glycosides led to the reduction of the expression levels and activities of MMP-9 and -2 without any significant difference between these flavonoid glycosides in zymography experiments. Protein expression levels of both MMP-9 and MMP-2 were inhibited and TIMP-1 protein level was enhanced by these flavonoid glycosides [33].
Kim et al., for the first time, report a detailed study on the inhibitory effects of phlorotannins in brown algae, Ecklonia cava (EC) on MMP activities. A novel gelatin digestion assay could visualize complete inhibition of bacterial collagenase-1 activity at 20 μg/ml of EC extract during preliminary screening studies. Sensitive fluorometric assay revealed that EC extract can specifically inhibit both MMP-2 and MMP-9 activities significantly (P34
The active compound from methanol extracts prepared from roots of Rhodiola sacra has been identified as 3-(3, 4-dihydroxy-phenyl)-acrylic acid phenethyl ester (caffeic acid phenethyl ester, CAPE) [35, 36]. And Lee et al. found that these active compounds can down-regulate enhanced MMP -9 activities [37].
Joe et al. examined the inhibitory effects of 29 seaweed extracts on transcriptional activities of MMP-1 expression. And found that the eckol and dieckol from Ecklonia species have showed strong inhibition of both NF-κB and AP-1 reporter activity, which were well correlated with their abilities to inhibit MMP-1 expression. In addition, MMP-1 expression was dramatically attenuated by treatment with the eckol or dieckol [38].
Matrix metalloproteinases (MMPs), a key component in photoaging of the skin due to exposure to ultraviolet A, appear to be increased by UV-irradiation-associated generation of reactive oxygen species (ROS). Ryu et al. demonstrates that the alga Corallina pilulifera methanol extract which has been shown a high phenolic content, reduced the expression of UV-induced MMP-2 and -9 in human dermal fibroblast by dose dependently manner, and has also antioxidant activity capable of strongly inhibiting free radicals [39].
In murine asthma model, Kim et al. observed that MMP-9 expression was significant reduced via the administration of Ecklonia cava extracts. And Ecklonia cava extracts reveal Suppressor of cytokine signaling-3 (SOCS-3) expression and a reduction in the increased eosinophil peroxidase (EPO) activities. Their results indicate that Ecklonia cava extracts may prove to be a useful therapeutic agent for the treatment of ovalbumin -induced asthma [40].
The compounds eckol, 2dieckol, 6,6′-bieckol and 1-(3′,5′-dihydroxyphenoxy) -7-(2″,4″,6″-trihydroxy-phenoxy)-2,4,9-trihydroxydibenzo-1,4,-dioxin were extracted from brown algae, Ecklonia cava, and Ryu et al. have investigated these compounds inhibited the proinflammatory cytokines induced expression of MMP-1, -3 and -13 [41].
Flavonoids and polyphenols MMPIs have excellent MMPs inhibitory activities; however they show a high toxicity level. Therefore, the pharmaceutical applications of these MMPIs are limited. Researchers should pay attention to reduce their toxicity levels by altering the structure in a way by preserves it’s bioactivity. Then this class of MMPIs will gain a huge potential to be used in clinical applications

2.3. Marine fatty acid MMPIs

Researchers have identified that the long-chain fatty acids could inhibit MMPs. however for different MMPs the degree of inhibition is different, such as oleic acid, elaidic acid can inhibit MMP-2 and MMP-9 with the micromol Ki values, although their inhibitory effects on collagenase-1 (MMP-1) are weak, as assessed using synthetic or natural substrates [42]. The fatty acid chain length and its degree of saturation is related to the level of inhibition, as the fatty acids with long carbon chains showed stronger inhibition than the short ones, and the nonsaturation degree showed a positive correlation to the overall inhibitory capacity of the fatty acid chains [42,43]. Fatty acids also bind to neutrophil elastase, the parinaric acids, fluorescent-conjugated tetraenoic fatty acids of plant origin, are inhibitors of neutrophil elastase. cis-Parinaric acid (cis-PA) interacts with the enzyme in two inhibitory modes. The high affinity interaction (Ki = 55 +/− 6 nM) results in partial noncompetitive inhibition of amidolytic activity, with 82% residual activity. A lower affinity interaction with cis-PA (Ki = 4 +/− 1 microM) results in competitive inhibition [44, 45]. the fatty acids also bind to plasmin, such as
The ability of oleic acid to modulate fibrinolysis was measured by following the urokinase-mediated and plasminogen-dependent cleavage of 125I-labelled fibrin clots. Oleic acid levels within the physiological range exerted a concentration-dependent inhibition of urokinase-mediated fibrinolytic activity [46, 47], and some other serine proteinases, meanwhile modulate their catalytic activities.
It is well known that the marine fishes are rich in omega-3 long-chain polyunsaturated fatty acids (ω3 LC-PUFAs), especially eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA), which are active nutrients [48]. Suzuki et al. found that the inhibition of lung metastasis of a colon cancer cell line by EPA and DHA was associated with a reduced activity of MMP-9, however MMP-2 activity was not affected by the diet containing PUFAs [49, 50]. The MMP-9 activity was reduced by in uterus, placenta and liver tissues of rat fed diets enriched with DHA, with a decreased activity of MMP-2 [50]. They explained their finding by a competition of the ω3 LC-PUFAs with arachidonic acid for incorporation into membrane phospholipids. This would consequently change the production of prostaglandin PGE2 and thereby affect on MMP activities.
Acetylenic fatty acids isolated from marine sponges have exhibited wide range of biological activities such as cytotoxicity [51], antimicrobial [52] and antifouling [53] activities, and enzyme inhibition [54]. Callysponginol sulfate A is the first sulfated C24 acetylenic fatty acid from marine organisms. Fujita et al. 2002 extracted the sodium 1-(12-hydroxy)octadecanyl sulfate from an ascidian collected in western Japan, inhibited MMP-2 in 2002. And both natural and synthetic forms inhibited MMP-2 with an IC50 value at 9.0 μg/mL; thus the stereochemistry of the hydroxyl group did not influence the activity [55]. And after one year, they reported another compound, callysponginol sulfate A, a new sulfated C24 acetylenic fatty acid, extracted from the marine sponge, Callyspongia truncate [56]. This compound inhibited recombinant MT1-MMP with an IC50 value at 15.0 μg/mL, however the desulfated callysponginol sulfate A did not show any inhibitory activity against MT1-MMP. Considering this result as well as the similar activity of structurally unrelated sulfated compounds, the MT1-MMP inhibition activity is probably a consequence of the sulfate [56].

2.4. Other marine natural products MMPIs

Shark cartilage extracts researches are very popular in recently [57]. The compounds extracted from shark cartilage (such as NeovastatÒ, AE-941, U-995 etc.) have been investigated on their potential use as MMPIs. These compounds were analyzed with regard to their anti-angiogenic and antimetastatic effects on the activity of several MMPs [58], because MMPs are intimately connected with angiogenetic and metastatic processes. The results revealed that NeovastatÒ inhibits enzymatic activity of MMP-2 with minor inhibition of MMP-1, -7, -9 and -13. And also interestingly the western blot analysis evidenced the presence of TIMP-like proteins within AE-941, could be responsible for its specific MMP inhibitory property [59]. The tissue inhibitors of metalloprotease 1, 2 and 3 (TIMP-1, -2, -3) and tumor suppressor protein genes have been cloned and characterized from shark cartilage extracts [52, 60, 61].
Alkaloid Ageladine A extract from the marine sponge, Agelas nakamurai, and Ageladine A inhibited not only MMP-2, but also MMPs-1, -8, -9, -12, and -13 with IC50 values of 2.0, 1.2, 0.39, 0.79, 0.33, and 0.47 μg/mL, respectively, while its N-methylated derivatives did not inhibit MMP-2. As we know that many potent MMP inhibitors are known to bind with Zn2+ in the catalytic domain. But Ageladine A was not capable to chelate Zn2+. Moreover, the kinetic analysis indicated that inhibition of MMP-2 by Ageladine A was not competitive when judged in the Lineweaver-Burk plot. Thus, the inhibition mechanism of Ageladine A was presumed to be unique [62].
The Atlantic cod (Gadus morhua) muscle contains a 21-kDa proteinase inhibitor. The inhibitor had properties similar to human TIMP-2. The inhibitor was found to inhibit the gelatin-degrading enzymes present in the gelatin-bound fraction. In addition, it inhibited gelatinolytic activity obtained from a human macrophage cell medium rich in MMP-9 [63].
(+)-Aeroplysinin-1, an antibacterial brominated compound produced by certain sponges, was selected during a blind high-throughput screening as new potential antiangiogenic compounds obtained from marine organisms. The concentration of MMP-2 in the medium conditioned by aeroplysinin-treated cells was clearly lower than that in untreated cell medium. The MMP-2 bands in aeroplysinin-treated cell conditioned media were 60 + 4% compared to those of untreated cells, whereas extracts of treated cells yielded MMP-2 bands that were almost twofold (1.77 + 0.04) those of untreated cells. Thus, aeroplysinin-1 seems to affect mainly the release of MMP-2 to the medium [64].

3. Conclusions

The marine environment is characterized by high biodiversity offering vast variety of natural products which could be used as potential drugs, particularly in the area of cancer chemotherapy, such like the matrix metalloproteinase inhibitors. Therefore continuation of finding new leads in this area of extracting bioactivity compounds from marine natural products will make much sense.
MMPIs design and synthesis has been done for ages and has gone through several development stages. Although many of the synthetic inhibitors of MMPs showed good inhibitory activity, however, the compounds do not have an ideal MMPs selectivity, combined with others limitations such as the low oral bioavailability, unstable metabolism, biological toxicity, and also these inhibitors in clinical trials show excessive side effects. Due to these major shortcomings this type of MMPIs failed to be used as drugs [3, 5, 65].
With MMPIs finding of functionality of MMP’s in normal physiology functions, the development of MMPIs entered a new period [66, 67]. In recent years, the non-metal chelating agent class of MMPIs reports has begun to appear. Isolating MMPs from marine natural products has been gradually gained more attention. Some marine natural products have been isolated with MMPs inhibitory activities and further, some compounds have special restraint or high selectivity [68]. Such as Ageladine A which inhibit MMP-2 was not competitive judging from the Lineweaver-Burk plot. Thus, the inhibition mechanism of Ageladine A was presumed to be unique [62]. These MMPIs will be the focus of future work.


This research was supported by a grant (M2007-0) from Marine Bioprocess Research Center of the Marine Bio 21 Center funded by the Ministry of Land, Transport and Maritime, Republic of Korea.


matrix metalloproteinases
extracellular matrix
matrix metalloproteinase inhibitors
tissue inhibitors of metalloproteinase
reversion-inducing cysteine-rich protein with kazal motifs
a disintegrin and metalloproteinases
safety analysis report
human dermal fibroblasts
carboxylated chitooligosaccharides
sulfated glucosamine
nuclear factor κB
activator protein-1
λ-carrageenan oligosaccharides
human umbilical vein endothelial cells
sulfated S. maindroni ink polysaccharide
Ecklonia cava

Resveratroli, piceatannoli, pterostilbeeni

J Agric Food Chem. 2004 Jul 28;52(15):4713-9.

Resveratrol, pterostilbene, and piceatannol in vaccinium berries.


A study was conducted to determine the presence of resveratrol, pterostilbene, and piceatannol in Vaccinium berries. Samples representing selections and cultivars of 10 species from Mississippi, North Carolina, Oregon, and Canada were analyzed by gas chromatography/mass spectrometry.

Resveratrol was found in Vaccinium angustifolium (lowbush blueberry), Vaccinium arboretum (sparkleberry), Vaccinium ashei (rabbiteye blueberry), Vaccinium corymbosum (highbush blueberry), Vaccinium elliottii (Elliott's blueberry), Vaccinium macrocarpon (cranberry), Vaccinium myrtillus (bilberry), Vaccinium stamineum (deerberry), Vaccinium vitis-ideae var. vitis-ideae (lingonberry), and Vaccinium vitis-ideae var. minor (partridgeberry) at levels between 7 and 5884 ng/g dry sample. Lingonberry was found to have the highest content, 5884 ng/g dry sample, comparable to that found in grapes, 6471 ng/g dry sample.

 Pterostilbene was found in two cultivars of V. ashei and in V. stamineum at levels of 99-520 ng/g dry sample.

 Piceatannol was found in V. corymbosum and V. stamineum at levels of 138-422 ng/g dry sample.

 These naturally occurring stilbenes, known to be strong antioxidants and to have cancer chemopreventive activities, will add to the purported health benefits derived from the consumption of these small fruits.

måndag 13 november 2017

Voisiko UMP vitamiinien ja energiaravinnon joukossa olla miksikään hyödyksi

tai haitaksi paremminkin kysyen.
 Otettava huomioon sen erityinen alue aineenvaihdunnassa.
Genomista  metabolisiin aitioihin ja eritykseen.
Metabolisena välituotteena  se on tärkeä.
 Genomisena sen normaaliesiintymä on RNA.ssa.

Per Arne Aas käsiteli U:n osuutta.  väitöstöistään alkaen.

UNG geeni

On olemassa pieniä proteiineja, joita koodaa UNG geeni (Urasiili DNA glykosylaasit). Nämä glykosylaasit eivät saa rikkoa RNA:n rakenteita eivätkä ne otakaan niitä urasiileja, jotka ovat muodossa dU, dUMP, U tai RNA. Vaan niillä on UDG-aktiviteetti.

on kappale sinänsä, mutta tässä keskityn vain urasiiliasiaan, joka on kappaleen alaotsikkoja. 

 Siis urasiileja tulee sytosiineista deaminoitumalla spontaanisti päivittäin 100-500 kpl ihmissolussa. Sytosiini , C,  on suojatumpana dsDNA:ssa kuin ssDNA:ssa ja deaminoituu 100 kertaa nopeammin ssDNA:ssa. Lisäksi DNA:ssa 3 % sytosiinista metyloituu 5-asemaan ja 5-meC puolestaan demetyloituu 3-5 kertaa nopeammin kuin sytosiini, joten tulee tymiiniäkin,T, aika vauhtia kiertotietä: Mutta tämä tymiini taas aiheuttaa T:G mismatch-tilanteen, ellei korjaanu ennen replikaatiota.

Tässä onkin sitten lisäksi tuntematonta tekijää, johon täytyy sen irronneen tymiinin osalta tarkemmin keskittyä myöhemmin. Kun se tippuu jonnekin (minne) hajoaako se , vai säilyykö se ja rikastuuko se uudestaan ?
( Minne ne tymiinimäärät menevät? Luulisi että kun niillä on vaikea synteesi, niilä olisi salvage )

Mutta nyt urasiilin puolelle.

"UNG-proteiinit (uracil DNA glykosylaasit)

ovat kooltaan 19-35 kDa ja niillä on korkea turn over - nopeus verrattuna muihin glykosylaaseihin. Urasiili poistuu nopeammin U:G parista kuin U:A-parista Urasiili, joka sijaitsee DNA:n 3´-päässä on myöskin huonompaa substraattia UNG-proteiineille kuin 5´-urasiili kun desoxyriboosi on fosforyloituna. Tätä korjaavaa entsyymiä estää urasiili, urasiilianalogit 6-aminourasiili ja 5-azaurasiili.
UNG sitoutuu ja scannaa DNA:ta pitkin pientä kuoppaa ja havainnee paikallisen helixheikkouden nappaamalla fosfaattirungosta. Kun UNG tapaa urasiilin, se taivuttaa DNA- runkoa 45 astetta ja aiheuttaa urasiilin irtautumisen heliksistä ja putoamisen entyymitaskuun. Vako on positiivisesti varautunut Entsyymn leusiini 272- sivuketju pitää sijaa tyhjällä emäspaikalla kuin ” tikkua ovenvälissä” tukeakseen extrahelikaalista konformaaiota. Urasiili roterataan 90 astetta desoksyriboosin suhteen, jolloin glykosyylisidos destabilisoituu eikä DNA enää vedä sitä. (”Pinch-push-pull” on glykosylaasin mekanismi). Lisäksi AP-kohta saa suojaa, kunnes endonukleaasi (APE1) ehtii sinne korjaamaan paikalle oikean emäksen.

UNG-proteiinit ovat korkeasti spesifisiä glykosylaaseja, mutta voivat vapauttaa myös joitain cytosiinin oksidaatiotuotteita kuten alloksaania, isodialuric-happoa, 5-hydroxyurasiilia ja 5-fluorourasiilia"
UNG-proteiinit omaavat myös erityisiä piirteitä verrattuna muihin glykosylaaseihin. Niiden aktiviteetti on 2-3 kertaa suurempi ssDNA:ta kohtaan kuin dsDNA:ta kohtaan, mikä on tietysti edullinen seikka, koska ssDNA stabiliteettikin on heikompi.
UNG2 on tärkeimpiä näistä glykosylaaseista .

UNG geenin Lokalisaatio 12q24.1.

Koko: UNG1 on 304 aminohappoa ja UNG2 on 313 aminohappoa.
UNG1 on mitokondriaalinen ja UNG2 on nukleaarinen ja sijaitsee replikaatio fokuksissa ja sillä on interaktiota replikaatioproteiinin A (RPA) ja muiden DNA-korjausprotiinien kanssa.
Sillä on interaktio PCNA kanssa (proliferating cell nuclear antigen), joten arvellaan, että se sijaitsee aivan juuri siinä, missä uusi DNA on replikoitumassa, replikaatiohaarukan edessä tai voi poistaa urasiilia (U) juuri muodostuneesta DNA:sta. Tämä sopisikin siihen seikkaan, että urasiilinpoistokyky on nopea ja mahdollisesti UNG2 pysyy samassa tahdissa nopeasti liikkuvan replikaatiohaarukan kanssa

UNGmRNA esiintyy kaikissa kudoksissa, eniten mitokondriapitoisissa, kuten lihas ja sydän.

UNG2 mRNA taas esiintyy kudoksissa missä soluproliferaatio on korkea. 

UDG-aktiviteetti on osoittautunut olevan solusyklin säätelemä seikka, pääsäätö tapahtuu transkriptiotasossa. UNG1-mRNA ja UNG2-mRNA säätyvät solusyklistä käsin. Myöhäisessä G1/ S faasissa säätyy nämä 2,5 ja vastavaasti 5 kertaisiksi pitoisuuksiltaan. Tätä seuraa UDG-aktiviteetin nousu 4-5 kertaiseksi myöhäis S- vaiheessa verrattuna alkavan G1 vaiheeseen. S- faasin jälkeen UNG2 mRNA alanee nopeasti ja UNG1 mRNA hitaasti. Siis: Kun on replikaatio, niin silloin UNG alkaa toimii tehokkaasti.

Miksi tämä UNG- geenifunktio on tärkeä?

Puhutaan V(D)J rekombinaatioista luuytimessä. B-lymfosyytit tekevät antibodeja ja antibodimuodostus taas tarvitsee omat vaihteensa, joka käyttää geneettistä taustakoneistoa. Class switch recombination (CSR) tarvitaan immunoglobuliinigeenien taustalla. B-solut omaavat tietyt geneettiset potentiaalit, kun ne ovat kypsiä ja itukeskuksissa kehossa. Niiden DNA:ssa on mahdollisuuksia äärimmäisiin erilaistumisiin, CSR:n lisäksi on somaattisia hypermutaatioita (SHM) taustalla. Mm. näistä kahdesta seikasta seuraa B-solujen kyky tehdä erilaisia antigeenivasteita peruslukemilta: IgM, IgG, IgA, IgE.

Jos tekijä AID (ctivation induced deaminase, targeted urasiilin muodostus!) puuttuu, kehittyy liikaa IgM-tyyppistä immunoglobuliinia. (CSR ja SHM ei esiinny), sekundaari lymfakudos on proliferoitunutta. Saman tapaista aiheuttaa, jos UNG2- vajausta esiintyy. (CSR on häiriintynyt ja SHM puutteellinen)
Tässä on kyse tilanteesta, missä Cytosiinin muutosta urasiiliksi keho käyttää tehdessään target-DNA:ssa vaihteen, jossa sitten UNG2 tekee abaasisen kohdan, joka voi prosessoitua molemmat vastaavat DNA-emäkset poistavaksi hyvänä merkkinä vaihdealueessa, stanssi! NHEJ liittää päät kuten V(D)J- rekombinaatiossa (NHEJ, non- homologous end-joining). Tämän function vaurio altistaa bakteeritulehduksille.

Muut urasiili DNA glykosylaasit

In vivo on muitakin UDG aktiviteettia omaavia entsyymeitä urasiileja irrottamassa kuin em UNG- geenin koodama UNG.
On mainittava ainakin kolme muuta: TDG, SMUG1 ja MBD4, jotka pystyvät ottamaan urasiileja pois DNA:sta. Ne poistavat myös eräitä urasiilianalogeja kuten 5-hydroksymetylurasiilia, 3,N-etenosytosiinia, 5-fluorourasiilia.
(UNG2 ja SMUG1 poikkeavat muista glykosylaaseista siinä, että ne pystyvät irrottamaan korkeammalla aktiviteetilla U:n ssDNA.sta).

SMUG1 (1999, 2001,2003)

on Single- strand selective monofunctional Uracil-DNA glykosylase ( 1999) . Nimi on sikäli erheellinen että se ottaa urasiilia sekä U:G että myös U:A- pareista. Poistaa myös 5-hU ja 5-foU.
Sijainti genomissa: 12q13.1-q14.
Koko 270 aa.

TDG (1993, 2002)

on T(U) mismatch glykosylaasi, joka ottaa pois T tai U-emäksen dsDNA- mismatch tilanteessa. Entsyymi hoitaa ensisjaisesti U:G mismatch ja sitten T:G mismatch- tilanteen. TDG on reportoitu transkriptiotekijäksikin.
Sijainti genomissa: 12q24.1.
Koko 410 aa.

MBD4, myös käytetään nimeä MED1 (1999, 2001)

Tämä ” methyl- binding domain protein 4” on monofunktionaalinen glykosylaasi, joka sitoutuu T:G tai T:U mismatch kohtiin ja vapauttaa T tai U näistä kohdista. Se kiinnittyy myös metyloituneeseen DNA:han in vitro ja saattanee vastavaikuttaa siihen mutageenisyyteen, mikä seuraa 5-metyylisytosiinin (5-meC) deaminoituessa tymiiniksi(T).
Tämän entsyymin kunto on syövän suhteen estävä seikka (1999)!
Entsyymissä on glykosylaasidomaani ja erillinen metyyliä sitova domaani. Tässä on kohta , joka on onkologian suhteen tärkeä.
Sijainti genomissa: 3q21.22.
Koko 580 aa.

Yhteenveto siitä, miten urasiilia tai hydroxymetylurasiilia voi korjata pois genomista

Replikoitumattomasta tai replikoituvasta osasta.
( Tri P Aas piirsi tästä kuvan)

Nukleoplasmi/ nukleoli, replikoitumaton osa
Tymiinin oksidaatiosta on tullut 5-HmU:A
Oksidatiosta ja deaminaatiosta on seurannut 5-meC ja täten 5-meU:G
Tilanne: Kromatidissa esiintyy pari HmU:A ja HmU:G.
Korjaus: SMUG1
Short patch BER (Base Excision Repair): APE1(AP endonukleaasi) , polymeraasi beetta, XRCC1, LigaasiI, Ligaasi III
(BER-tie poistaa solusta päivittäin 10 000 DNA leesiota)

b. Cytosiinin deaminaatiosta on seurannut dsDNA tai ssDNA:ssa virhe
Tilanne: U:G
Korjaus UNG2 ( nukleoplasma); SMUG1 ( nukleoli), (MED4, methyl binding domain4), (TDG; T(U) mismatch glykolase)
Short patch BER: APE1, polymeraasi beetta, XRCC1 ( BER- koordinaattoriproteiini),
Ligaasi I ja Ligaasi III
Multiproteiinikompleksi UNG2:n kanssa.

Replication foci
Cytosiinin deaminaatio ssDNA:ssa tapahtunut.
Tilane: esiintyy U
Korjaus: UNG2
Urasiilin excisio, poistaminen UNG2-entsyymillä; haarukan regressio tai rekombinaatio käyttämällä informaatiota sisarkromatidista, joka tässä kohdassa nyt on kapeasti ds; tai transleesiosynteesi (TLS)
Replikaation tapahtuessa inkorporoituu vahingossa dUMP.
Tilanne tulee U:A
Korjaus: UNG2
Long patch BER: APE2 (?), Polymeraasi delta ja epsilon, PCNA, FEN1 (flap endonuclease 1) , Ligaasi I.

(DNA-korjausmekanismeista teen suomalaista yhteenvetoa parhaillaan tästä allaolevasta lähteetä)

AAS PER ARNE (NTNU 2004 Norwegian Cancer Society) Macromolecular maintenance in human cells- Repair of uracil in DNA and methylations in DNA and RNA
Harper::Review of physiological chemistry

Kommentti: harkitsisin tuota UMP asiaa. Pitäsii katsoa minne se suolistossa livistää. Tokko se genomitasoon kuitenkaan pääsee. Mutta pidän sitä vähän erikoisena   aineksena vitamiinien joukossa.
vaikka olenhan sitä katsonut toista kymmentä vuotta sokeriaineenvaihdunnan kartalla- aivo ja rintarauhanen käyttävät tuota  UTP vaihdetta energia-alueaitioissan ja rakenteittensa koostamisessa.  Rintarauhanen käyttää järejtelmää tuotamaan laktoosia.  Ja ilmeisesti suolisolussa laktoosin käistetlyssä on eduksi  että UTP  ja UDP muodostuu. Ehkä suolisolussa UMP jollain tavalla pääsee  vaikutamaan tähän alueeseen.  Galaktoosi menee nopeasti soluun ja sen pitää päästä lopulta epimeroitumaan UDP-glukoosiksi ja siinät arvitaan UTP.

 Minne nukleotidit suolesta menee? Löytyi englantilaista selistystä.
  • Two major classes of nucleotides make up DNA and RNA: purines and pyrimidines. Pyrimidine nucleotides contain a single-ring molecular structure bonded to a sugar molecule, whereas purines contain a double-ringed structure bonded to the sugar molecule. DNA contains two purines, called adenine and guanine, as well as two pyrimidines, thymine and cytosine. RNA contains similar nucleotides, with the purine uracil found in place of thymine. The presence of all five nucleotides proves important for cellular function.
  •  You absorb nucleotides from the food you eat, and dietary sources provide the nucleotides your cells need to survive. The nucleotides in food are typically present as long strands of genetic material, which can contain several million nucleotides. After a meal, your pancreas secretes two types of enzymes, deoxyribonucleases, which break down DNA, and ribonucleases, which break down RNA. These enzymes cleave the DNA or RNA from your food into shorter chains of nucleotides, which your body then absorbs and transports to your cells for use.
  • Since almost all foods and beverages are made up of either intact cells or cellular contents, almost all foods provide a source of nucleotides. In general, you should consume adequate nucleotides regardless of the specific foods that make up your diet. Consume grains, meats, fish, nuts, legumes, fruits and vegetables, fruit juices and milk as sources of nucleotides, as well as sources of several other nutrients.
    Special Circumstances
    In rare cases, individuals may lack the ability to digest DNA and RNA from their food properly, preventing their bodies from breaking down and absorbing nucleotides. For example, the rare genetic disorder pancreatic agenesis prevents the production and secretion of digestive enzymes. Individuals suffering from the disorder often take digestive enzymes to aid in the digestion of DNA and RNA, as well as the proteins, carbohydrates and fats in food. 
  • Tiedetään aika paljon ATP:stä, cAMP signaalijärejstelmästä,
  • GTP:stä, cMP järejstelmästä, CTP ja cCTP järjestelmästä. 
  • Vähemmän TTP ja UTP järjstelmistä.  cUMP karttaa opn hieman olemassa.